Univ.-Prof. Dipl.-Phys. Dr. Ivo Hofacker
1090 Wien
Raum : 5.30
Lehrveranstaltungen
Wintersemester 2026
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270020 PR Wahlfachpraktikum D (Bachelormodul) - Theoretische Chemie / Computergestützte Biologische Chemie
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270021 SE Erstellen der Bachelorarbeit D - Theoretische Chemie / Computergestützte Biologische Chemie
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301590 VU Grundlagen der Bioinformatik
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311599 UE Praktikum Bioinformatik
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500501 SE Doktoranden Forschungsseminar - Data and Knowledge
Sommersemester 2026
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053521 VU Sequenz- und Struktur-Bioinformatik
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270020 PR Wahlfachpraktikum D (Bachelormodul) - Theoretische Chemie / Computergestützte Biologische Chemie
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270021 SE Erstellen der Bachelorarbeit D - Theoretische Chemie / Computergestützte Biologische Chemie
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270054 VO Bioinformatik der Nukleinsäuren
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301578 VO Spezielle Themen der Bioinformatik
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500501 SE Doktoranden Forschungsseminar - Data and Knowledge
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530034 SE Journal Club Bio- and Cheminformatics
Wintersemester 2025
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270020 PR Wahlfachpraktikum D (Bachelormodul) - Theoretische Chemie / Computergestützte Biologische Chemie
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270021 SE Erstellen der Bachelorarbeit D - Theoretische Chemie / Computergestützte Biologische Chemie
-
301590 VU Grundlagen der Bioinformatik
-
301599 UE Praktikum Bioinformatik
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500501 SE Doktoranden Forschungsseminar - Data and Knowledge
Publikationen
RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes. / Entzian, Gregor; Hofacker, Ivo L.; Ponty, Yann et al.
in: Bioinformatics, Band 37, Nr. 15, 01.08.2021, S. 2126-2133.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Functional RNA Structures in the 3′ UTR of Mosquito-Borne Flaviviruses. / Wolfinger, Michael Thomas; Ochsenreiter, Roman Wilhelm; Hofacker, Ivo.
Virus Bioinformatics . Hrsg. / Dmitrij Frishman; Manja Marz. Chapman and Hall/CRC, 2021.
Veröffentlichungen: Beitrag in Buch › Beitrag in Buch/Sammelband › Peer Reviewed
The locality dilemma of Sankoff-like RNA alignments. / Mueller, Teresa; Miladi, Milad; Hutter, Frank et al.
in: Bioinformatics, Band 36, 07.2020, S. I242-I250.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Transcriptional profiling of human macrophages during infection with Bordetella pertussis. / Petrackova, Denisa; Farman, Mariam R.; Amman, Fabian (Korresp. Autor*in) et al.
in: RNA Biology, Band 17, Nr. 5, 03.05.2020, S. 731-742.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution. / Kim, Doo Nam; Thiel, Bernhard C.; Mrozowich, Tyler et al.
in: Nature Communications, Band 11, Nr. 1, 148, 09.01.2020.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Bi-alignments as models of incongruent evolution of RNA sequence and secondary structure. / Waldl, Maria; Will, Sebastian; Wolfinger, Michael T. et al.
Computational Intelligence Methods for Bioinformatics and Biostatistics: 16th International Meeting, CIBB 2019, Revised Selected Papers. Hrsg. / Paolo Cazzaniga; Daniela Besozzi; Ivan Merelli; Luca Manzoni. Band 12313 Cham: Springer, 2020. S. 159-170 (Lecture Notes in Computer Science, Band 12313).
Veröffentlichungen: Beitrag in Buch › Beitrag in Konferenzband › Peer Reviewed
Efficient Computation of Base-pairing Probabilities in Multi-strand RNA Folding. / Lorenz, Ronny (Korresp. Autor*in); Flamm, Christoph; Hofacker, Ivo L. et al.
Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies: Volume 3: BIOINFORMATICS, 23-31, 2020 , Valletta, Malta. Hrsg. / Elisabetta DeMaria; Ana Fred; Hugo Gamboa. [Sétubal]: SciTePress, 2020. S. 23-31.
Veröffentlichungen: Beitrag in Buch › Beitrag in Konferenzband › Peer Reviewed
INTARNAHELIX-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target prediction. / Gelhausen, Rick (Korresp. Autor*in); Will, Sebastian; Hofacker, Ivo L. et al.
in: Journal of Bioinformatics and Computational Biology (JBCB), Band 17, Nr. 5, 1940009, 10.2019.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Updated Phylogeny of Chikungunya Virus Suggests Lineage-Specific RNA Architecture. / Schneider, Adriano de Bernardi; Ochsenreiter, Roman; Hostager, Reilly et al.
in: Viruses, Band 11, Nr. 9, 798, 09.2019.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs. / Deforges, Jules; Reis, Rodrigo S.; Jacquet, Philippe et al.
in: Plant Physiology, Band 180, Nr. 1, 05.2019, S. 305-322.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Projekte
Decorating RNA for a purpose
Vorhersage von RNA-RNA Interaktionen
Transcri. Analyse von Bordetell
RNA Biologie
Vorträge
The impact of post-transcriptional modifications on the tRNA secondary structure"
Predicting the Effect of RNA Modifications on RNA Structure
Positional Impacts on tRNA Structure: Constraint-Based Prediction and Links to Modification Sites
Design of cotranscriptional folding paths
Detecting Pseudouridines in tRNAs: Addressing Computational Mapping Errors
Coarse Grained Sampling of 3D RNA Structures in Ernwin
Structure and Design of RNase resistant RNA structures
Free energy calculation of modified nucleotides by molecular dynamics simulations
The effect of modified nucleotides on RNA structure
The effect of modified nucleotides on RNA structure
Computational Estimation of Energy Parameters
Modeling RNA-RNA interaction formation on direct paths
The effect of modified nucleotides on secondary structure prediction in tRNA
Predicting the effect of modified nucleotides on RNA structure
Computational Estimation of Energy Parameters for modified Nucleotides
Incongruent Evolution of RNA Sequence and Structure
Modified nucleotides in RNA secondary structure prediction
Experiments in Deep Learning for RNA Secondary Structure Prediction
Features of RNA-RNA interaction kinetics
Simulations of cotranscriptional folding explain the impact of sequence mutations
Experiments in Deep Learning for RNA Secondary Structure Prediction
An RNA kinetics ansatz derived from an efficient prediction of RNA pathways
Experiments in Deep Learning for RNA Secondary Structure Prediction
Incongruent Evolution of RNA Sequence and Structure
Modeling RNA-RNA interaction formation on direct paths
MODELING THE KINETICS OF RNA-RNA INTERACTION FORMATION
Prediction of co-transcriptional RNA folding for Modeling Riboswitches
Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Structure
Co-transcriptional RNA folding kinetics
Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Structure
Human & Bordetella pertussis co-expression networks
Computational Approaches to RNA Folding Kinetics
RNA secondary Structures
RNA-RNA Interaction Kinetics for Refining RNA Targeting Screens
RNA-RNA Interaction Kinetics for Refining RNA Targeting Screens
Co-transcriptional Folding Kinetics and Riboswitch Modeling
Identification and Classification of Pseudoknots and their Impact on RNA 3D structure prediction
Predicting Pseudoknots in RNA 3D structures
RNA 2D folding Dynamics and 3D Structure Prediction
Coarse Grain 3D RNA Structure Prediction
Computational Biology with RNA Structures, Interactions, and Dynamics
Beyond RNA secondary structure
siRNA and Oligo Design
RNA folding kinetics and energy landscapes
Energy directed RNA folding
In silico Annotation of noncoding RNAs and their Targets
Beyond RNA secondary structure:G-quadruplexes and non-canonical pairs
Predicting Targets and Effects of Bacterial small RNAs
Folding with Fancy Constraints -Secondary Structures from Probing Data
Advances in RNA Bioinformatics. Prediction of RNA Structures, Interactions, and Folding Kinetics
RNA Folding Dynamics -- trajectories and landscapes
RNA Genefinding
Energy Landscapes for RNA Folding: Time- dependent Landscapes and 2D Projections
Detection, annotation, and target search for noncoding RNAs
ncRNA Annotation and Target Prediction
From noncoding RNA Search to Annotation
Prediction of ncRNA Interaction Targets
RNA Structure thermodynamics, basic folding
Solving RNA bioinformatics problems using the Vienna RNA Package
Stochastic Models, HMMs, SCFGs, and model training
Prediction of RNA-RNA interaction
Prediction of RNA-RNA interaction
Computational Detection and Annotation of Non-Coding RNAs
Basic Algorithms in RNA Bioinformatics
Noncoding RNAs in Bacteria
RNA Bioinformatics -- An Overview
Prediction of RNA-RNA interaction
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