Univ.-Prof. Dipl.-Phys. Dr. Ivo Hofacker
Forschungsgruppe Bioinformatics and Computational Biology
Währinger Straße 29
Leiter
1090 Wien
Raum : 5.30
Lehrveranstaltungen
Wintersemester 2026
-
270020 PR Wahlfachpraktikum D (Bachelormodul) - Theoretische Chemie / Computergestützte Biologische Chemie
-
270021 SE Erstellen der Bachelorarbeit D - Theoretische Chemie / Computergestützte Biologische Chemie
-
301590 VU Grundlagen der Bioinformatik
-
311599 UE Praktikum Bioinformatik
-
500501 SE Doktoranden Forschungsseminar - Data and Knowledge
Sommersemester 2026
-
053521 VU Sequenz- und Struktur-Bioinformatik
-
270020 PR Wahlfachpraktikum D (Bachelormodul) - Theoretische Chemie / Computergestützte Biologische Chemie
-
270021 SE Erstellen der Bachelorarbeit D - Theoretische Chemie / Computergestützte Biologische Chemie
-
270054 VO Bioinformatik der Nukleinsäuren
-
301578 VO Spezielle Themen der Bioinformatik
-
500501 SE Doktoranden Forschungsseminar - Data and Knowledge
-
530034 SE Journal Club Bio- and Cheminformatics
Wintersemester 2025
-
270020 PR Wahlfachpraktikum D (Bachelormodul) - Theoretische Chemie / Computergestützte Biologische Chemie
-
270021 SE Erstellen der Bachelorarbeit D - Theoretische Chemie / Computergestützte Biologische Chemie
-
301590 VU Grundlagen der Bioinformatik
-
301599 UE Praktikum Bioinformatik
-
500501 SE Doktoranden Forschungsseminar - Data and Knowledge
Publikationen
3D feasibility of 2D RNA-RNA interaction paths by stepwise folding simulations. / Beckmann-Schneider, Irene Katharina; Waldl, Maria; Will, Sebastian et al.
in: RNA, Band 30, Nr. 2, 02.2024, S. 113-123.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Avirulent phenotype promotes Bordetella pertussis adaptation to the intramacrophage environment. / Farman, Mariam R.; Petrackova, Denisa; Kumar, Dilip et al.
in: Emerging microbes & infections, Band 12, Nr. 1, e2146536, 31.12.2023.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package. / Yao, Hua Ting (Korresp. Autor*in); Lorenz, Ronny; Hofacker, Ivo L. et al.
in: Algorithms for Molecular Biology, Band 18, Nr. 1, 8, 12.2023.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Modified RNAs and predictions with the ViennaRNA Package. / Varenyk, Yuliia; Spicher, Thomas; Hofacker, Ivo L. et al.
in: Bioinformatics, Band 39, Nr. 11, btad696, 01.11.2023.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Local RNA folding revisited. / Waldl, Maria; Spicher, Thomas; Lorenz, Ronny et al.
in: Journal of Bioinformatics and Computational Biology, Band 21, Nr. 4, 2350016, 01.08.2023.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Investigating RNA-RNA interactions through computational and biophysical analysis. / Mrozowich, Tyler; Park, Sean M; Waldl, Maria et al.
in: Nucleic Acids Research, Band 51, Nr. 9, 22.05.2023, S. 4588-4601.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model. / Badelt, Stefan (Korresp. Autor*in); Lorenz, Ronny; Hofacker, Ivo L.
in: Bioinformatics (Oxford, England), Band 39, Nr. 1, btad034, 01.01.2023.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Insights into the secondary and tertiary structure of the Bovine Viral Diarrhea Virus internal Ribosome Entry Site. / Gosavi, Devadatta; Wower, Iwona; Beckmann-Schneider, Irene Katharina et al.
in: RNA Biology, Band 19, Nr. 1, 31.12.2022, S. 496-506.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction. / Flamm, Christoph; Wielach, Julia; Wolfinger, Michael T et al.
in: Frontiers in bioinformatics, Band 2, 835422, 11.07.2022.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
Enhancing the Cell-Free Expression of Native Membrane Proteins by In Silico Optimization of the Coding Sequence-An Experimental Study of the Human Voltage-Dependent Anion Channel. / Zayni, Sonja; Damiati, Samar; Moreno-Flores, Susana et al.
in: Membranes, Band 11, Nr. 10, 741, 10.2021.
Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed
11
-
20
von
192
Projekte
Decorating RNA for a purpose
Jantsch, Michael F. (Projektkoordinator*in),
Ameres, Stefan
(Projektleiter*in),
Hofacker, Ivo
(Projektleiter*in)
01/03/2020 29/02/2028
Laufend
Vorhersage von RNA-RNA Interaktionen
Hofacker, Ivo
(Projektleiter*in)
01/12/2016 30/11/2020
Abgeschlossen
Transcri. Analyse von Bordetell
Hofacker, Ivo
(Projektleiter*in)
29/10/2015 28/10/2018
Abgeschlossen
RNA Biologie
Leodolter-Barta, Andrea (Projektleiter*in),
von Haeseler, Arndt (Co-Projektleiter*in),
Bläsi, Udo
(Projektleiter*in),
Görke, Boris
(Co-Projektleiter*in),
Hofacker, Ivo
(Co-Projektleiter*in),
Moll, Isabella
(Co-Projektleiter*in),
Ayatollahi, Zahra
(Projektadministrator*in),
Martins, Angela (Projektadministrator*in)
01/12/2006 30/06/2021
Abgeschlossen
Vorträge
The impact of post-transcriptional modifications on the tRNA secondary structure"
Thomas Spicher
,
Katrin Gutenbrunner
,
Ronny Lorenz
,
Ivo Hofacker
41st TBI Winterseminar in Bled
Konferenz,
Vortrag
8.2.2026
Predicting the Effect of RNA Modifications on RNA Structure
Ivo Hofacker
,
Thomas Spicher
,
Yuliia Varenyk
,
Ronny Lorenz
,
Michael Thomas Wolfinger
2025 RiboClub Annual Meeting
Konferenz,
Vortrag
21.9.2025
Positional Impacts on tRNA Structure: Constraint-Based Prediction and Links to Modification Sites
Thomas Spicher
,
Yuliia Varenyk
,
Ronny Lorenz
,
Ivo Hofacker
SFB RNA Deco Annual RNA Retreat
Konferenz,
Vortrag
11.9.2025
Design of cotranscriptional folding paths
Stefan Badelt
,
Laurenz Miksch
,
Ivo Hofacker
40th TBI Winterseminar, Bled
Konferenz,
Vortrag
9.2.2025
Detecting Pseudouridines in tRNAs: Addressing Computational Mapping Errors
Cristian A. Velandia-Huerto
,
Ivo Hofacker
SFB RNA Deco Retreat Innsbruck
Seminar/Workshop,
Vortrag
6.2.2025
Coarse Grained Sampling of 3D RNA Structures in Ernwin
Ivo Hofacker
Computational Approaches to RNA Structure and Function
Seminar/Workshop,
Vortrag
21.7.2024
Structure and Design of RNase resistant RNA structures
Leonhard Paul Sidl
,
Ivo Hofacker
Vienna Doctoral School in Chemistry: Panel A: Retreat 2024
Seminar/Workshop,
Vortrag
19.2.2024
Free energy calculation of modified nucleotides by molecular dynamics simulations
Thomas Spicher
,
Ronny Lorenz
,
Ivo Hofacker
39<sup>th</sup> TBI Winterseminar in Bled
Seminar/Workshop,
Vortrag
11.2.2024
The effect of modified nucleotides on RNA structure
Yuliia Varenyk
,
Ronny Lorenz
,
Thomas Spicher
,
Ivo Hofacker
39<sup>th</sup> TBI Winterseminar in Bled
Seminar/Workshop,
Vortrag
11.2.2024
The effect of modified nucleotides on RNA structure
Yuliia Varenyk
,
Ronny Lorenz
,
Thomas Spicher
,
Ivo Hofacker
SFB 80 RNA-DECO: Decorating RNA for a purpose<br/>
Konferenz,
Vortrag
1.2.2024
Computational Estimation of Energy Parameters
Thomas Spicher
,
Ronny Lorenz
,
Ivo Hofacker
38<sup>th </sup>TBI Winterseminar in Bled
Seminar/Workshop,
Vortrag
12.2.2023
Modeling RNA-RNA interaction formation on direct paths
Maria Waldl
,
Ivo Hofacker
,
Sebastian Will
38<sup>th </sup>TBI Winterseminar in Bled
Seminar/Workshop,
Vortrag
12.2.2023
The effect of modified nucleotides on secondary structure prediction in tRNA
Yuliia Varenyk
,
Ivo Hofacker
,
Ronny Lorenz
,
Thomas Spicher
38<sup>th </sup>TBI Winterseminar in Bled
Seminar/Workshop,
Vortrag
12.2.2023
Predicting the effect of modified nucleotides on RNA structure
Ivo Hofacker
Vienna RNA Conference - RNA modification and processing
Konferenz,
Vortrag
26.10.2022
Computational Estimation of Energy Parameters for modified Nucleotides
Thomas Spicher
,
Ronny Lorenz
,
Ivo Hofacker
18th Herbstseminar der Bioinformatik
Seminar/Workshop,
Vortrag
3.10.2022
Incongruent Evolution of RNA Sequence and Structure
Maria Waldl
,
Sebastian Will
,
Michael Thomas Wolfinger
,
Ivo Hofacker
,
Peter Stadler
18th Herbstseminar der Bioinformatik
Seminar/Workshop,
Vortrag
3.10.2022
Modified nucleotides in RNA secondary structure prediction
Yuliia Varenyk
,
Ivo Hofacker
,
Ronny Lorenz
,
Thomas Spicher
18th Herbstseminar der Bioinformatik
Seminar/Workshop,
Vortrag
3.10.2022
Experiments in Deep Learning for RNA Secondary Structure Prediction
Ivo Hofacker
Dagstuhl Seminar: Rational Design of RiboNucleic Acids
Seminar/Workshop,
Vortrag
18.9.2022
Features of RNA-RNA interaction kinetics
Maria Waldl
,
Sebastian Will
,
Ivo Hofacker
Dagstuhl Seminar: Rational Design of RiboNucleic Acids
Seminar/Workshop,
Vortrag
18.9.2022
Simulations of cotranscriptional folding explain the impact of sequence mutations
Stefan Badelt
,
Ronny Lorenz
,
Ivo Hofacker
Dagstuhl Seminar: Rational Design of RiboNucleic Acids
Seminar/Workshop,
Vortrag
18.9.2022
Experiments in Deep Learning for RNA Secondary Structure Prediction
Ivo Hofacker
German Conference on Bioinformatics (GCB 2022)
Konferenz,
Vortrag
6.9.2022
An RNA kinetics ansatz derived from an efficient prediction of RNA pathways
Ivo Hofacker
7<sup>th</sup> Computational Approaches to RNA Structure and Function meeting
Konferenz,
Vortrag
7.8.2022
Experiments in Deep Learning for RNA Secondary Structure Prediction
Ivo Hofacker
7<sup>th</sup> Computational Approaches to RNA Structure and Function meeting
Konferenz,
Vortrag
7.8.2022
Incongruent Evolution of RNA Sequence and Structure
Maria Waldl
,
Sebastian Will
,
Ivo Hofacker
,
Peter Stadler
7<sup>th</sup> Computational Approaches to RNA Structure and Function meeting
Konferenz,
Vortrag
7.8.2022
Modeling RNA-RNA interaction formation on direct paths
Maria Waldl
,
Irene Katharina Beckmann-Schneider
,
Sebastian Will
,
Ivo Hofacker
7<sup>th</sup> Computational Approaches to RNA Structure and Function meeting
Konferenz,
Vortrag
7.8.2022
MODELING THE KINETICS OF RNA-RNA INTERACTION FORMATION
Maria Waldl
,
Irene Katharina Beckmann-Schneider
,
Sebastian Will
,
Ivo Hofacker
Doctoral School of Chemistry Panel A
Vortragsreihe, Kolloquium,
Vortrag
17.11.2021
Prediction of co-transcriptional RNA folding for Modeling Riboswitches
Ivo Hofacker
5th Annual Meeting on RNA: from basic research to industrial applications
Konferenz,
Vortrag
7.10.2019
Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Structure
Maria Waldl
,
Sebastian Will
,
Michael Thomas Wolfinger
,
Ivo Hofacker
,
Peter Stadler
17. Herbstseminar der Bioinformatik
Seminar/Workshop,
Vortrag
30.9.2019
Co-transcriptional RNA folding kinetics
Ivo Hofacker
RNA Informatics 2019
Konferenz,
Vortrag
9.9.2019
Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Structure
Maria Waldl
,
Sebastian Will
,
Michael Thomas Wolfinger
,
Ivo Hofacker
,
Peter Stadler
CIBB 2019
Konferenz,
Vortrag
4.9.2019
Human & Bordetella pertussis co-expression networks
Mariam Rukhama Farman
,
Ivo Hofacker
34th TBI Winterseminar in Bled
Seminar/Workshop,
Vortrag
10.2.2019
Computational Approaches to RNA Folding Kinetics
Ivo Hofacker
Algorithms in Structural Bioinformatics (AlgoSB)
Summer/Winter School,
Vortrag
15.1.2019
RNA secondary Structures
Ivo Hofacker
Algorithms in Structural Bioinformatics (AlgoSB)
Summer/Winter School,
Vortrag
14.1.2019
RNA-RNA Interaction Kinetics for Refining RNA Targeting Screens
Maria Waldl
,
Sebastian Will
,
Ivo Hofacker
16. Herbstseminar der Bioinformatik
Konferenz,
Vortrag
1.10.2018
RNA-RNA Interaction Kinetics for Refining RNA Targeting Screens
Maria Waldl
,
Sebastian Will
,
Ivo Hofacker
German Conference on Bioinformatics (GCB 2018)
Konferenz,
Vortrag
25.9.2018
Co-transcriptional Folding Kinetics and Riboswitch Modeling
Ivo Hofacker
Computational Analysis of RNA Structure and Function
Seminar/Workshop,
Vortrag
15.7.2018
Identification and Classification of Pseudoknots and their Impact on RNA 3D structure prediction
Irene Katharina Beckmann-Schneider
,
Bernhard Thiel
,
Ivo Hofacker
33rd TBI Winterseminar in Bled
Seminar/Workshop,
Vortrag
11.2.2018
Predicting Pseudoknots in RNA 3D structures
Irene Katharina Beckmann-Schneider
,
Ivo Hofacker
15. Herbstseminar der Bioinformatik
Seminar/Workshop,
Vortrag
2.10.2017
RNA 2D folding Dynamics and 3D Structure Prediction
Ivo Hofacker
Workshop "RNA: Structure, Dynamics, and Function"
Seminar/Workshop,
Vortrag
26.5.2016
Coarse Grain 3D RNA Structure Prediction
Ivo Hofacker
Retreat of the DK RNA Biology and SFB RNA-REG
Konferenz,
Vortrag
14.4.2016
Computational Biology with RNA Structures, Interactions, and Dynamics
Ivo Hofacker
51st Winter Seminar
Seminar/Workshop,
Vortrag
9.1.2016
Beyond RNA secondary structure
Ivo Hofacker
cphRNA 2014: Summer School in RNA Bioinformatics
Konferenz,
Vortrag
28.6.2014
siRNA and Oligo Design
Ivo Hofacker
cphRNA 2014: Summer School in RNA Bioinformatics
Konferenz,
Vortrag
25.6.2014
RNA folding kinetics and energy landscapes
Ivo Hofacker
cphRNA 2014: Summer School in RNA Bioinformatics
Konferenz,
Vortrag
24.6.2014
Energy directed RNA folding
Ivo Hofacker
cphRNA 2014: Summer School in RNA Bioinformatics
Konferenz,
Vortrag
23.6.2014
In silico Annotation of noncoding RNAs and their Targets
Ivo Hofacker
Retreat of the DK RNA Biology and SFB RNA-REG
Konferenz,
Vortrag
11.4.2014
Beyond RNA secondary structure:G-quadruplexes and non-canonical pairs
Ivo Hofacker
Bioinformatics 2013 / BIT13
Konferenz,
Vortrag
26.6.2013
Predicting Targets and Effects of Bacterial small RNAs
Ivo Hofacker
Regulating with RNA in Bacteria
Konferenz,
Vortrag
4.6.2013
Folding with Fancy Constraints -Secondary Structures from Probing Data
Ivo Hofacker
Vortrag
24.7.2012
Advances in RNA Bioinformatics. Prediction of RNA Structures, Interactions, and Folding Kinetics
Ivo Hofacker
Vortrag
19.11.2011
RNA Folding Dynamics -- trajectories and landscapes
Ivo Hofacker
EMBO Practical Course on Computational RNA Biology 2010
Konferenz,
Vortrag
30.4.2010
RNA Genefinding
Ivo Hofacker
EMBO Practical Course on Computational RNA Biology 2010
Konferenz,
Vortrag
28.4.2010
Energy Landscapes for RNA Folding: Time- dependent Landscapes and 2D Projections
Ivo Hofacker
Computational methods for RNA analysis
Seminar/Workshop,
Vortrag
5.8.2009
Detection, annotation, and target search for noncoding RNAs
Ivo Hofacker
KU Bioinformatics Workshop 2009
Seminar/Workshop,
Vortrag
26.1.2009
ncRNA Annotation and Target Prediction
Ivo Hofacker
EMBO Workshop New Functions of Regulatory RNAs in Pro- and Eucaryotes
Seminar/Workshop,
Vortrag
13.1.2009
From noncoding RNA Search to Annotation
Ivo Hofacker
Non-Coding RNAs: Computational Challenges and Applications
Konferenz,
Vortrag
28.4.2008
Prediction of ncRNA Interaction Targets
Ivo Hofacker
Non-Coding RNAs: Computational Challenges and Applications
Konferenz,
Vortrag
28.4.2008
RNA Structure thermodynamics, basic folding
Ivo Hofacker
EMBO Practical Course on Computational RNA Biology 2008
Summer/Winter School,
Vortrag
14.4.2008
Solving RNA bioinformatics problems using the Vienna RNA Package
Ivo Hofacker
EMBO Practical Course on Computational RNA Biology 2008
Summer/Winter School,
Vortrag
14.4.2008
Stochastic Models, HMMs, SCFGs, and model training
Ivo Hofacker
EMBO Practical Course on Computational RNA Biology 2008
Summer/Winter School,
Vortrag
14.4.2008
Prediction of RNA-RNA interaction
Ivo Hofacker
IMA Workshop, RNA in Biology, Bioengineering and Nanotechnology
Seminar/Workshop,
Vortrag
29.10.2007
Prediction of RNA-RNA interaction
Ivo Hofacker
Workshop Medical Applications of ncRNA at the 3rd World Congress on
Regenerative Medicine
Seminar/Workshop,
Vortrag
20.10.2007
Computational Detection and Annotation of Non-Coding RNAs
Ivo Hofacker
Ernst Klenk Symposium in Molecular Medicine
Konferenz,
Vortrag
30.9.2007
Basic Algorithms in RNA Bioinformatics
Ivo Hofacker
Mini course on non-coding RNAs and RNA informatics 2007
Summer/Winter School,
Vortrag
17.9.2007
Noncoding RNAs in Bacteria
Ivo Hofacker
Mini course on non-coding RNAs and RNA informatics 2007
Summer/Winter School,
Vortrag
17.9.2007
RNA Bioinformatics -- An Overview
Ivo Hofacker
Mini course on non-coding RNAs and RNA informatics 2007
Summer/Winter School,
Vortrag
17.9.2007
Prediction of RNA-RNA interaction
Ivo Hofacker
Microsymposium on Small RNAs
Konferenz,
Vortrag
21.5.2007
Weiter zu: Leitung & Team | Personensuche | Home