Thomas Spicher, BSc MSc
1090 Wien
Courses
Summer term 2026
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053520 VU Algorithmic bioinformatics
Winter term 2025
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053530 VU Statistical methods in bioinformatics
Summer term 2025
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053520 VU Algorithmic bioinformatics
Publications
Integrating High-Throughput RNA-RNA Interaction Data Into RNA Secondary Structure Prediction. / Skibinski, Denis; Spicher, Thomas; Sidl, Leonhard et al.
Bioinformatics Research and Applications - 21st International Symposium, ISBRA 2025, Proceedings. ed. / Jing Tang; Xin Lai; Zhipeng Cai; Wei Peng; Yanjie Wei. Springer Science and Business Media Deutschland GmbH, 2026. p. 151-162 (Lecture Notes in Computer Science, Vol. 15757 LNBI).
Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction. / von Löhneysen, Sarah (Corresponding author); Spicher, Thomas; Varenyk, Yuliia et al.
In: Journal of computational biology : a journal of computational molecular cell biology, Vol. 31, No. 6, 01.06.2024, p. 549-563.
Publications: Contribution to journal › Article › Peer Reviewed
Modified RNAs and predictions with the ViennaRNA Package. / Varenyk, Yuliia; Spicher, Thomas; Hofacker, Ivo L. et al.
In: Bioinformatics, Vol. 39, No. 11, btad696, 01.11.2023.
Publications: Contribution to journal › Article › Peer Reviewed
Local RNA folding revisited. / Waldl, Maria; Spicher, Thomas; Lorenz, Ronny et al.
In: Journal of Bioinformatics and Computational Biology, Vol. 21, No. 4, 2350016, 01.08.2023.
Publications: Contribution to journal › Article › Peer Reviewed
Talks
Predicting the Effect of RNA Modifications on RNA Structure
Hofacker, I. (Speaker), Spicher, T. (Contributor), Varenyk, Y. (Contributor), Lorenz, R. (Contributor) & Wolfinger, M. T. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Positional Impacts on tRNA Structure: Constraint-Based Prediction and Links to Modification Sites
Spicher, T. (Speaker), Varenyk, Y. (Contributor), Lorenz, R. (Contributor) & Hofacker, I. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Integrating High-Throughput RNA-RNA Interaction Data into RNA Secondary Structure Prediction
Spicher, T. (Speaker), Skibinski, D. (Contributor), Sidl, L. P. (Contributor), Holotová, P. (Contributor), Pan, Y. (Contributor), Faissner, M. (Contributor), Velandia-Huerto, C. A. (Contributor), Lorenz, R. (Contributor), Waldl, M. (Contributor), Yao, H.-T. (Contributor) & Stadler, P. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Free energy calculation of modified nucleotides by molecular dynamics simulations
Spicher, T. (Speaker), Lorenz, R. (Contributor) & Hofacker, I. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
The effect of modified nucleotides on RNA structure
Varenyk, Y. (Speaker), Lorenz, R. (Contributor), Spicher, T. (Contributor) & Hofacker, I. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
The effect of modified nucleotides on RNA structure
Varenyk, Y. (Speaker), Lorenz, R. (Contributor), Spicher, T. (Contributor) & Hofacker, I. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Free energy calculation of modified nucleotides by molecular dynamics simulations
Spicher, T. (Speaker)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Computational Estimation of Energy Parameters
Spicher, T. (Speaker), Lorenz, R. (Contributor) & Hofacker, I. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
The effect of modified nucleotides on secondary structure prediction in tRNA
Varenyk, Y. (Speaker), Hofacker, I. (Contributor), Lorenz, R. (Contributor) & Spicher, T. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Computational Estimation of Energy Parameters for modified Nucleotides
Spicher, T. (Speaker), Lorenz, R. (Contributor) & Hofacker, I. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Modified nucleotides in RNA secondary structure prediction
Varenyk, Y. (Speaker), Hofacker, I. (Contributor), Lorenz, R. (Contributor) & Spicher, T. (Contributor)
Activity: Talks and presentations › Talk or oral contribution › Science to Science
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